evomics
← Workshop on Population and Speciation Genomics

Workshop on Population and Speciation Genomics

2022

Český Krumlov, Czech Republic

27

Sessions

67

Participants

26

Countries

24 faculty

Faculty

Julia M.I. Barth· University of Oslo / University of BaselPieter Clauw· Gregor Mendel Institute of Molecular Plant BiologyMatteo Fumagalli· Queen Mary University of LondonMatthew Hahn· Indiana UniversityScott Handley· Washington University in St. LouisFlora Jay· Université Paris-Saclay, CNRS, INRIAChris Jiggins· University of CambridgeThorfinn Korneliussen· University of CopenhagenFabrizio Mafessoni· Max Planck Institute for Evolutionary AnthropologyMilan Malinsky· University of BaselMichael Matschiner· Natural History Museum, University of OsloBritta Meyer· University of HamburgLeonie Moyle· Indiana UniversitySimon Myers· University of OxfordRasmus Nielsen· UC Berkeley / University of CopenhagenJasmine Rees· University of PennsylvaniaWalter Salzburger· University of BaselDerek Setter· University of EdinburghVitor Sousa· University of LisbonLeo Speidel· RIKENJan Stefka· University of South BohemiaAlexander Suh· Uppsala UniversityEmiliano Trucchi· Marche Polytechnic UniversityGeorgia Tsambos· University of Washington

Instructors

Angela Fuentes-Pardo· Uppsala University, SwedenMilan Malinsky· University of Bern, SwitzerlandJulia M.I. Barth· University of Basel, SwitzerlandMichael Matschiner· University of Oslo, NorwayAndrea Bours· MPI for Evolutionary Biology, GermanyJan Stefka· Univ. South Bohemia, Czech RepublicHannes Svardal· University of Antwerp, BelgiumEmiliano Trucchi· Marche Polytechnic University, ItalyAngelica Cuevas· University of Oslo, Norway
5th Jun
14-17
UNIX primer
Practical
Workshop Team
6th Jun
09-12
Workshop introduction
Orientation
Workshop Team
14-17
Likelihood and probability
Lecture
Michael Matschiner
19-22
AMI/Jupyter tutorial & Probability activity
Practical
Workshop Team
7th Jun
09-12
Population genomics
Lecture
Rasmus Nielsen
14-17
ANGSD activity
Practical
Rasmus Nielsen, Thorfinn Korneliussen
8th Jun
09-12
Coalescent theory and introgression
Lecture
Matthew Hahn
14-17
Multiple testing
Lecture
Matthew Hahn
19-22
D-statistics activity
Practical
Workshop Team
9th Jun
09-12
Model-based inference of population history
Lecture
Vitor Sousa
14-17
fastsimcoal2 activity
Practical
Vitor Sousa
19-22
Species tree inference activity
Practical
Workshop Team
10th Jun
09-12
Selection and adaptation
Lecture
Leonie Moyle
13th Jun
09-12
Speciation with gene flow
Lecture
Chris Jiggins
14-17
Structural variation
Lecture
Alexander Suh
19-22
Structural variation activity
Practical
Valentina Peona
14th Jun
09-12
Machine Learning
Lecture
Matteo Fumagalli, Flora Jay
14-17
Selection inference ML activity
Practical
Matteo Fumagalli
19-22
Demography inference ML activity
Practical
Flora Jay
15th Jun
09-12
Tree sequences
Lecture
Simon Myers
14-17
Relate activity
Practical
Simon Myers, Jasmin Rees, Leo Speidel
19-22
Open lab
Practical
Workshop Team
16th Jun
09-12
Simulation
Lecture
Georgia Tsambos
14-17
Simulation with msprime activity
Practical
Georgia Tsambos
19-22
Inference with tsinfer activity
Practical
Georgia Tsambos
17th Jun
09-12
Ancient genomics
Lecture
Fabrizio Mafessoni
14-17
Wrap-up
Discussion
Workshop Team

Materials · 24 files

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