← Workshop on Genomics

Workshop on Genomics

2017

Český Krumlov, Czech Republic

36

Sessions

83

Participants

20

Countries

22 faculty

Faculty

Dag Ahrén· Lund University Julian Catchen· University of Illinois Rayan Chikhi· Institut Pasteur Bill Cresko· University of Oregon Sonya Dyhrman· Columbia University Evan Eichler· University of Washington Jennifer Gardy· Bill & Melinda Gates Foundation Brian Haas· Broad Institute of MIT and Harvard Scott Handley· Washington University in St. Louis Guy Leonard· University of Oxford Daniel McDonald· University of Colorado Boulder Paul McMurdie· Independent/Industry Josephine Paris· University of Exeter Konrad Paszkiewicz· University of Exeter Karin Rengefors· Lund University Sophie Shaw· All Wales Medical Genomics Service Ramunas Stepanauskas· Bigelow Laboratory for Ocean Sciences Tobias Uller· Lund University Yoshiki Vazquez-Baeza· BiomeSense Elin Videvall· Uppsala University Chris Wheat· Stockholm University Mike Zody· Broad Institute

Instructors

Sarah Baldwin· McGill UniversityAnna Karnkowska· Warsaw UniversityGuy Leonard· University of ExeterDaniel McDonald· UC San DiegoMaria Pachiadaki· Bigelow Laboratory for Ocean SciencesJosie Paris· University of ExeterSophie Shaw· University of AberdeenYoshiki Vazquez Baeza· UC San DiegoElin Videvall· Lund University

Date

Time

Topic

Type

Presenter(s)

8th Jan

18-22

Reception

Orientation

Workshop Team

9th Jan

09-12

Introduction and Orientation

Orientation

Karin Rengefors

14-17

Genome Structural Variation

Lecture

Evan Eichler

19:30-22

Scientific Speed Networking

Orientation

Workshop Team

10th Jan

09-12

History and New Developments in Sequencing Technology

Lecture

Konrad Paszkiewicz

14-17

Cloud Computing and Computing Hardware

Lecture

Workshop Team

19-22

Introduction to UNIX

Practical

Julian Catchen

11th Jan

09-12

Genomics Study Design

Lecture

Mike Zody

14-17

Advanced Unix

Practical

Julian Catchen

19-22

Sequence Data Quality Control

Practical

Sophie Shaw

12th Jan

09-12

Alignment Methods Lab

Practical

Mike Zody

14-17

Genomics Lab

Practical

Konrad Paszkiewicz

19-22

Genomics Lab Continuation

Practical

Konrad Paszkiewicz

13th Jan

09-12

Genome Assembly

Lecture

Rayan Chikhi

14-17

Genome Assembly Lab

Practical

Rayan Chikhi

19-22

Genome Assembly Lab Continuation

Practical

Rayan Chikhi

14th Jan

09-12

Phytoplankton Physiological Ecology

Lecture

Sonya Dyhrman

14-17

Introduction to R

Practical

Elin Videvall, Scott Handley

18-22

Town Tour and Dinner

Social

Workshop Team

15th Jan

all day

Free Day

Social

Workshop Team

16th Jan

09-12

RAD-seq

Lecture

Bill Cresko

14-17

Stacks Lab

Practical

Julian Catchen

19-22

Stacks Lab Continuation

Practical

Julian Catchen

17th Jan

09-12

Metagenomics

Lecture

Paul McMurdie

14-17

QIIME Lab

Practical

Daniel McDonald, Yoshiki Vazquez-Baeza

19-22

PhyloSeq Lab

Practical

Paul McMurdie

18th Jan

09-12

Transcriptomics

Lecture

Brian Haas

14-17

Transcriptomics Lab

Practical

Brian Haas

19-22

Transcriptomics Lab Continuation

Practical

Brian Haas

19th Jan

09-12

Single Cell Genomics

Lecture

Ramunas Stepanauskas

14-17

Lies, Damn Lies and Genomics

Lecture

Chris Wheat

19-22

Final Open Lab

Practical

Workshop Team

20th Jan

09-12

Genomics in Public Health

Lecture

Jennifer Gardy

14-17

Epigenetics in Ecology and Evolution

Lecture

Tobias Uller

19-22

End of Workshop Dinner and Party

Social

Workshop Team

21st Jan

all day

Departure

travel

Workshop Team

Materials · 13 files

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