← Workshop on Genomics

Workshop on Genomics

2026

Český Krumlov, Czech Republic

35

Sessions

74

Participants

23

Countries

25 faculty

Faculty

Dag Ahrén· Lund University Benjamin Buchfink· Max Planck Institute for Biology Tübingen Madeline Chase· University of Oregon Nathan Clark· University of Pittsburgh Petr Daněček· Wellcome Sanger Institute Milos Duchoslav· Charles University Evan Eichler· University of Washington Rosa Fernández· Institute of Evolutionary Biology (IBE, CSIC-UPF)Brian Haas· Broad Institute of MIT and Harvard Scott Handley· Washington University in St. Louis Katharina Hoff· Universität Greifswald Daniel Kintzl· University of Vienna Guy Leonard· University of Oxford Antoine Limasset· University of Lille Camille Marchet· CNRS / University of Lille Maliheh Mehrshad· Uppsala University Claire Mérot· CNRS ECOBIO, Université de Rennes Mercè Montoliu Nerín Josephine Paris· University of Exeter Olga Vinnere Pettersson· Uppsala University Camilla Santos· Wellcome Sanger Institute Arnau Sebé Pedrós· Centre for Genomic Regulation Rachel Steward· Stockholm University Marcela Uliano-Silva· Wellcome Sanger Institute Chris Wheat· Stockholm University

Date

Time

Topic

Type

Presenter(s)

11th Jan

18-22

Reception Dinner

Social

Everyone

12th Jan

09-12

Introduction and Orientation

Orientation

Josie Paris, Daniel Kintzl

14-17

Sequencing Technologies

Lecture

Olga Vinnere Pettersson

19-22

Dreams, Fantasy Dreams, and Genomics

Social

Everyone

13th Jan

09-12

AMIs, Cloud Computing and UNIX Introduction

Practical

Guy Leonard, Mercè Montoliu Nerín

14-17

UNIX Continuation

Practical

Mercè Montoliu Nerín

19-22

Essential File Types in Genomics

Practical

Petr Daněček

14th Jan

09-12

Alignment

Lecture

Benjamin Buchfink

14-17

Genome Assembly

Lecture

Camille Marchet, Antoine Limasset

19-22

Genome Assembly

Practical

Camille Marchet, Antoine Limasset

15th Jan

09-12

The Wonders of Genome Assembly!

Lecture

Marcela Uliano-Silva

14-17

Manual Curation of Genome Assemblies

Lecture

Camilla Santos

19-22

Variant Calling (SNPs and Indels)

Practical

Petr Daněček

16th Jan

09-12

Experimental Design in Genomics

Lecture

Olga Vinnere Pettersson

14-17

Genome Annotation

Lecture

Katharina Hoff

19-22

Genome Annotation

Practical

Katharina Hoff

17th Jan

09-12

Lies, Damn Lies, and Genomics

Lecture

Chris Wheat

14-17

Best Practices in Genomics and Bioinformatics

Practical

Dag Ahrén

19-22

Mid-Workshop Dinner

Social

Everyone

18th Jan

All Day

Free Day

Social

Everyone

19th Jan

09-12

Genome Structural Variation

Lecture

Evan Eichler

14-17

Using LLMs in Bioinformatics

Lecture

Scott Handley

19-22

Genomics Adventure / Introduction to R

Practical

Guy Leonard, Miloš Duchoslav

20th Jan

09-12

Transcriptomics, Single Cell and Spatial Transcriptomics

Lecture

Brian Haas

14-17

Structural Variants

Practical

Claire Mérot

19-22

Population Genomics

Practical

Madeline Chase

21st Jan

09-12

Single Cell Genomics

Lecture

Arnau Sebé Pedrós

14-17

Comparative Genomics

Practical

Nathan Clark

19-22

Transcriptomics and Gene Expression Analyses

Practical

Rachel Steward

22nd Jan

09-12

Metagenomics and Metatranscriptomics

Lecture

Maliheh Mehrshad

14-17

Phylogenomics

Lecture

Rosa Fernández

19-22

Genomics Adventure

Practical

Guy Leonard

23rd Jan

09-12

Evolutionary Adaptation and Comparative Genomics

Lecture

Nathan Clark

14-17

Round Table Discussions and Certificates

Orientation

Everyone

19-22

End of Workshop Party

Social

Everyone

Materials · 39 files