evomics
← Workshop on Population and Speciation Genomics

Workshop on Population and Speciation Genomics

2018

Český Krumlov, Czech Republic

24

Sessions

69

Participants

25

Countries

21 faculty

Faculty

Anders Albrechtsen· University of CopenhagenClaudia Bank· SIB Swiss Institute of BioinformaticsJulia M.I. Barth· University of Oslo / University of BaselRichard Durbin· University of CambridgeDaniel Falush· Institut Pasteur of ShanghaiAngela Hancock· Max Planck Institute for Plant Breeding Research (moving to Purdue University in 2025)Scott Handley· Washington University in St. LouisKelley Harris· University of WashingtonChris Jiggins· University of CambridgeMilan Malinsky· University of BaselSimon Martin· University of CambridgeMichael Matschiner· Natural History Museum, University of OsloBritta Meyer· University of HamburgHuw Ogilvie· Rice UniversityLudovic Orlando· CNRS / University of ToulouseWalter Salzburger· University of BaselVitor Sousa· University of LisbonJan Stefka· University of South BohemiaDavid Swofford· Duke UniversityEmiliano Trucchi· Marche Polytechnic UniversityTim Vaughan· Centre for Computational Evolution
21st Jan
09-12
Introduction and orientation
Orientation
Walter Salzburger, Workshop Team
14-17
UNIX introduction
Practical
Workshop Team
22nd Jan
09-12
Likelihood and Bayesian inference
Lecture
David Swofford
14-17
Likelihood and Bayesian inference activity
Practical
David Swofford
23rd Jan
09-12
Population structure
Lecture
Daniel Falush
14-17
STRUCTURE and fineStructure workshops
Practical
Daniel Falush
24th Jan
09-12
Experimental design / Demography inference
Lecture
Richard Durbin
14-17
Demography inference with BEAST2
Practical
Tim Vaughan
25th Jan
09-12
Inferring population history with low-coverage data
Lecture
Anders Albrechtsen
14-17
ANGSD Lab
Practical
Anders Albrechtsen
26th Jan
09-12
Demographic inference based on Site frequency spectrum
Lecture
Vitor Sousa
14-17
fastsimcoal2 activity
Practical
Vitor Sousa
19-22
Structured coalescent analyses with BEAST2
Practical
Tim Vaughan
27th Jan
09-12
The genomics of organismal diversification
Lecture
Walter Salzburger
29th Jan
09-12
Positive and negative selection
Lecture
Claudia Bank
14-17
Species tree estimation using SVDQuartets
Practical
David Swofford
30th Jan
09-12
Genomics basis of adaptive evolution
Lecture
Angela Hancock
14-17
Species delimitation with SNAPP
Practical
Huw Ogilvie
31st Jan
09-12
Evolution of the mutation spectrum
Lecture
Kelley Harris
14-17
Mutation spectrum analysis activity
Practical
Kelley Harris
1st Feb
09-12
Speciation with gene flow
Lecture
Chris Jiggins
14-17
ABBA BABA statistics and Topology weighting
Practical
Simon Martin
2nd Feb
09-12
Ancient genomics
Lecture
Ludovic Orlando
14-17
Wrap-up session
Discussion
Workshop Team

Materials · 35 files

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