Genomics Lab

Before you start the exercise to ensure you can access all the PFAM  databases needed for the downstream strain exercises.

1. Download the following pfam_update while in your AMI instance.
2. Once it opens copy/paste it into separate text file (use a text editor like nano so that the paste is plain text only).
3. Save the text file as pfam_update.sh this will make it a shell file that can be executed.
4. Put the file on your instance in /home/ubuntu
5. execute the script using the following:

• >cd /home/ubuntu
• >sh pfam_udpate.sh

That’s it you should be good to go!

Exercise

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