Genomics Lab

Before you start the exercise to ensure you can access all the PFAM  databases needed for the downstream strain exercises.

  1. Download the following pfam_update while in your AMI instance.
  2. Once it opens copy/paste it into separate text file (use a text editor like nano so that the paste is plain text only).
  3. Save the text file as this will make it a shell file that can be executed.
  4. Put the file on your instance in /home/ubuntu
  5. execute the script using the following:
  • >cd /home/ubuntu
  • >sh

That’s it you should be good to go!