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Evolution and Genomics

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    • Workshop on Genomics
      • 2025 Workshop on Genomics, Cesky Krumlov
      • 2024 Workshop on Genomics, Cesky Krumlov
      • 2023 Workshop on Genomics, Cesky Krumlov
      • 2022 Workshop on Genomics, Cesky Krumlov
      • 2020 Workshop on Genomics, Cesky Krumlov, Czech Republic
      • 2019 Workshop on Genomics, Cesky Krumlov
      • 2018 Workshop on Genomics, Cesky Krumlov
      • 2017 Workshop on Genomics, Cesky Krumlov
      • 2016 Workshop on Genomics, Cesky Krumlov
      • 2015 Workshop on Genomics, Cesky Krumlov
      • 2014 Workshop on Genomics, Cesky Krumlov
      • 2012 Workshop on Genomics, Český Krumlov
      • 2013 Workshop on Genomics, Cesky Krumlov
      • 2011 Workshop on Genomics, Český Krumlov
      • 2011 Workshop on Genomics, Fort Collins
      • 2011 Workshop on Genomics, Smithsonian Institution
    • Workshop on Population and Speciation Genomics
      • 2025 Workshop on Population and Speciation Genomics, Cesky Krumlov
      • 2022 Workshop on Population and Speciation Genomics, Cesky Krumlov
      • 2020 Workshop on Population and Speciation Genomics, Cesky Krumlov
      • 2018 Workshop on Population and Speciation Genomics, Cesky Krumlov
      • 2016 Workshop on Population and Speciation Genomics, Cesky Krumlov
    • Workshop on Phylogenomics
      • 2024 Workshop on Phylogenomics, Cesky Krumlov
      • 2019 Workshop on Phylogenomics, Cesky Krumlov
      • 2017 Workshop on Phylogenomics, Cesky Krumlov
    • Workshop on Molecular Evolution
      • 2015 Workshop on Molecular Evolution, Cesky Krumlov
      • 2013 Workshop on Molecular Evolution, Český Krumlov
      • 2011 Workshop on Molecular Evolution, Český Krumlov
      • 2011 Workshop on Molecular Evolution, Fort Collins
    • Harvard University Workshops
      • 2017 Workshop on Transcriptomics, Harvard University
      • 2016 Workshop on Microbial Genomics, Harvard University
      • 2015 Harvard University Workshop on Metagenomics
      • 2014 HU-CFAR Metagenomics and Transcriptomics
    • Workshop on Microbiome and Transcriptome Analysis, Durban, South Africa
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      • Advanced Topic: Bioconductor
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Genomics Software

The genomics software section of this web site contains information on software used for various genomics analysis.

Software pages are available for the following programs:

Assembly

ABySS
BLAT
Bowtie
MIRA
Newbler
Velvet

Genome Analysis Frameworks

Galaxy

Genome Analysis Tools

FASTQC
FASTX-Toolkit
SAMTools

Metagenomics

MEGAN
MG-RAST
 QIIME

Transcriptomics

Cufflinks
MISO
Picard
Scripture

Variation

VarScan
snpEFF

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