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Notice!
A few changes to the schedule are still being made. Please check back regularly for updates. You can view previous schedules to get an idea of the topics and faculty members we regularly work with. The application deadline has passed, but we will still consider late applications for our waiting list. You can apply now on our Application Page.

The 2022 Workshop on Genomics is being held from 22 May through the 4th of June, 2022 in Český Krumlov, Czech Republic. This is the first time we will be organizing Workshops in the Summer months and is the 11th time the Workshop of Genomics will be held in the Czech Republic.

The Workshop on Genomics was developed in response to the increasing demand for training on how to effectively analyze and manage data generated by modern sequencing technologies. The Workshop curriculum includes extensive coverage of fundamental techniques required of all studies utilizing modern sequence data. The first half of the Workshop focuses on management and modification of modern sequence data files using the Unix command-line and editors to manipulate large data files, best practices for sequence data generation, management and analysis and how to use R to analyze biological data. The second-half of the Workshop is devoted to specific sub-disciplines within the genomic sciences. While these topics may change from year-to-year, efforts are made to devote significant amounts of time to techniques being used widely in the field (e.g. transcriptomics, genome assembly, metagenomics, population genomics).

The Workshop registration fee is $1,950. This amount does not cover travel, lodging or boarding. Many important details about this and other topics can be read on our FAQ page.

A full schedule can be viewed below. Modifications and additions to the schedule may be made at any time prior to the beginning of the Workshop; however, the overall content and structure will remain largely the same.

The Workshop on Genomics is organized by:

Dag Ahren, Lund University, Sweden

Rayan Chikhi, Institut Pasteur, France

Sonya Dyhrman, Columbia University, US

Scott Handley, Washington University, US

Guy Leonard, University of Oxford, UK

Josephine Paris, University of L’Aquila, Italy

Sophie Shaw, All Wales Medical Genomics Service, UK

 


Workshop Information

Instance Addresses


 

Week 1 : 22-28 May, 2022

Date Day Time Presenter Topic Location
22 May Sunday 6p – 10p Everyone Reception Hotel Zlaty Andel
23 May Monday 9a – 12p Scott Handley Introduction and Orientation Town Services Presentation Egon Schiele Museum
  Monday 2p – 5p Sonya Dyhrman From flask to field: tracking the drivers of phytoplankton physiological ecology across marine ecosystems Egon Schiele Museum
  Monday 7:30p – 10p Everyone Scientific Speed Networking TBD
24 May Tuesday 9a – 12p Mike Zody Sequencing Technology and Study Design Egon Schiele Museum
  Tuesday 2p – 5p Sophie Shaw Introduction to Unix and Software Installation Lab House of Prelate
  Tuesday 7p – 10p Sophie Shaw Working with Sequence Data: Quality Control House of Prelate
25 May Wednesday 9a – 12p Kirsten Bos Ancient DNA and Infectious Disease Egon Schiele Museum
  Wednesday 2p – 5p Mike Zody Working with Sequence Data: Alignment and Variant Calling Lab House of Prelate
  Wednesday 7p – 10p Mike Zody Variant Calling Lab II House of Prelate
26 May Thursday 9a – 12p Antoine Limasset and Camille Marchet Working with Sequence Data: Assembly Egon Schiele Museum
  Thursday 2p – 5p Antoine Limasset and Camille Marchet Working with Sequence Data Lab: Assembly House of Prelate
  Thursday 7p – 10p Guy Leonard Genomics Lab House of Prelate
27 May Friday 9a – 12p Workshop Team Introduction to R and Reproducible Research House of Prelate
  Friday 2p – 5p Malachi Griffith Genomic Data Visualization and Interpretation Genomic Data Visualization Lab I – Introduction to ggplot2 House of Prelate
  Friday 7p – 10p Malachi Griffith Genomic Data Visualization Lab II – ggplot2 Exercises House of Prelate
28 May Saturday 9a – 12p Rayan ChikhI We’re Gonna Need a Bigger Instance House of Prelate
  Saturday 2p – 5p Everyone

Genome Structural Variation and Open Lab

House of Prelate
  Saturday 6p – 10p Everyone Town Tour and Dinner Town Square

Week 2 : 29 May through 4 June, 2022

Date Day Time Presenter Topic Location
29 May Sunday All Day Everyone Free Day You decide!
30 May Monday 9a – 12p Brian Haas Transcriptomics Lecture Egon Schiele Museum
  Monday 2p – 5p Brian Haas Transcriptomics Lab I House of Prelate
  Monday 7p – 10p Brian Haas Transcriptomics Lab II House of Prelate
31 May Tuesday 9a – 12p Scott Handley Microbial Ecology Egon Schiele Museum
  Tuesday 2p – 5p David Barnett Microbiome Analysis and Visualization Lab 1 (microViz) House of Prelate
  Tuesday 7p – 10p David Barnett Microbiome Analysis and Visualization Lab 2 (microViz) House of Prelate
1 June Wednesday 9a – 12p Ilya Korsunsky Single Cell Transcriptomics House of Prelate TBC
  Wednesday 2p – 5p Ilya Korsunsky Single Cell Transcriptomics House of Prelate
  Wednesday 7p – 10p Ilya Korsunsky Single Cell Transcriptomics House of Prelate
2 June Thursday 9a – 12p Emiliano Trucchi Population Genomics Lecture Egon Schiele Museum
  Thursday 2p – 5p

Josephine Paris and Emiliano Trucchi

Population Genomics Lab 1 House of Prelate
  Thursday 7p – 10p Josephine Paris and Emiliano Trucchi Population Genomics Lab 2 House of Prelate
3 June Friday 9a – 12p Chris Wheat Lies, Damn Lies and Genomics Egon Schiele Museum
  Friday 2p – 5p Everyone Open Lab – Required Attendance (Certificates and T-Shirts will be issued.) Transferring Data House of Prelate
  Friday 7p – 10p Everyone End of Workshop Party You decide!
4 June Saturday   Everyone Departure