Here you can find lecture slides and learning activities from the 2016 Workshop on Population and Speciation Genomics.

Week I

Workshop introduction

Computer lab and UNIX

File formats, VCFtools, Plink

R and adegenet, STRUCTURE, smartpca

Bayesian and Likelihood Inference

Genotype and SNP calling

Introgression and Admixture Modelling

Natural selection and Adaptation

Population demography

Genomics of Organismal diversification

Week II

Ancient genomics

Analyses of demography, population structure, and species delimitation with BEAST2

Evolutionary population genomics

Detecting selective sweeps


Divergence and gene flow between species