Here you can find lecture slides and learning activities from the 2016 Workshop on Population and Speciation Genomics.



Week I


Workshop introduction


Computer lab and UNIX


File formats, VCFtools, Plink


R and adegenet, STRUCTURE, smartpca


Bayesian and Likelihood Inference


Genotype and SNP calling


Introgression and Admixture Modelling


Natural selection and Adaptation


Population demography


Genomics of Organismal diversification




Week II


Ancient genomics


Analyses of demography, population structure, and species delimitation with BEAST2


Evolutionary population genomics


Detecting selective sweeps


Introgression


Divergence and gene flow between species