Genomics Software

The genomics software section of this web site contains information on software used for various genomics analysis.

Software pages are available for the following programs:

Assembly

ABySS
BLAT
Bowtie
MIRA
Newbler
Velvet

Genome Analysis Frameworks

Galaxy

Genome Analysis Tools

FASTQC
FASTX-Toolkit
SAMTools

Metagenomics

MEGAN
MG-RAST
QIIME

Transcriptomics

Cufflinks
MISO
Picard
Scripture

Variation

VarScan
snpEFF