Python introduction lecture
Please find a PDF with notes to the lecture here.
All input files are provided here.
You will run your commands with IPython.
Install it on your instance with this command:
sudo apt-get install ipython
First, login into your instance using x2go and open a terminal.
Next, download data and example scripts for both exercises:
cd ~/wpsg_2016/activities/; mkdir dadiExercise; cd dadiExercise
tar -xzf wspg2016.tgz
Start with the one that seems most interesting to you.
1) Data processing exercise
Parse a frequency spectrum (crudely) from 1000 Genomes Data.
2) Simulation exercise
Simulate the Wright-Fisher model