Welcome to the web-page for the Viromics Workshop at the University of Cape Town, South Africa.

Author: Scott A. Handley, Washington University School of Medicine

Date: 4-5 December, 2015

Presentations

Introduction to R

R Exercise

Introduction to UNIX

Sequence Data Quality Control

Data Files for UNIX Sessions

Example FastQC Output – Pre QC

Example FastQC Output – Post QC

1,000 FastQ Sequences

BBTools Commands

PhiX Genome

Data files for Phage Richness Estimations

Podoviridae

Myoviridae

Siphoviridae

Caudovirales

Phage Richness RMarkdown Document